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Occurrence of Eukaryotes in the size fraction >300 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a Bongo net and analysed on a ZooScan imaging platform
Citable as data publication
Romagnan, J.B., Jalabert, L., Llopiz Monferrer, N., Elineau, A., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Tara Oceans Consortium Coordinators, Karsenti, E., Pesant, S., Irisson, J.O., Lombard, F., Stemmann, L., Gorsky, G.; (2020) Occurrence of Eukaryotes in the size fraction >300 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a Bongo net and analysed on a ZooScan imaging platform. https://doi.org/10.14284/518
Contact: Lombard, Fabien ;

Access data
Archived data
Availability: Creative Commons License This dataset is licensed under a Creative Commons Attribution 4.0 International License.

Description
Tara expeditions sampled the world’s oceans with standardized protocols, putting an exceptional effort into sampling plankton diversity across a large size range, using a combination of water samples and net tows. The efforts to explore the genomic diversity of plankton, through metabarcoding and metagenomics, have led to well publicized papers and have made the renown of Tara. While a similar extensive effort has been put on imaging, the datasets are not public yet. In a limited number of stations, in addition to the usual 5μm -> ~5cm Tara sampling strategy, Bongo net samples were taken during the day and during the night, at the same station; this is the content of this dataset. Using a 300µm mesh net, it cover organisms from 300µm to ~3cm more

Bongo net (300μm mesh) hauled vertically from 500m depth to the surface, once during the day, and once during the night. Sample preserved in 4% buffered formalin and stored over the long term at the Centre de Collections Planctoniques de Villefranche (CCPv). Sample scanned on a ZooScan, images processed with ZooProcess and sorted taxonomically on EcoTaxa, within the Plateforme d'Imagerie Quantitative de Villefranche (PIQv). The PIQv and CCPv platforms are part of EMBRC-France, a national Research Infrastructure supported by ANR, under the reference ANR-10-INSB-02.

Scope
Themes:
Biology > Plankton > Zooplankton
Keywords:
Marine, EcoTaxa, Imaging, ZooSCAN, EurOBIS calculated BBOX, World Oceans, Acartiidae Sars G.O., 1903, Annelida, Augaptilidae Sars G.O., 1905, Calanidae Dana, 1849, Calanoida, Calocalanus pavo (Dana, 1852), Candaciidae Giesbrecht, 1893, Centropagidae Giesbrecht, 1893, Copepoda, Eucalanidae Giesbrecht, 1893, Euchaetidae Giesbrecht, 1893, Eumalacostraca, Euphausiacea, Evadne Lovén, 1836, Foraminifera, Heterorhabdidae Sars G.O., 1902, Hyperiidea, Oithonidae Dana, 1853, Penilia Dana, 1852, Phaeodaria, Pyrocystaceae (Schütt, 1896) Lemmermann, 1899, Rhizaria, Temoridae Giesbrecht, 1893, Tomopteridae Grube, 1850

Geographical coverage
EurOBIS calculated BBOX Stations
Bounding Box
Coordinates: MinLong: -168,3483; MinLat: -64,355 - MaxLong: 174,86; MaxLat: 79,2183 [WGS84]
World Oceans [Marine Regions]

Temporal coverage
7 September 2009 - 27 October 2013

Taxonomic coverage
Acartiidae Sars G.O., 1903 [WoRMS]
Annelida [WoRMS]
Augaptilidae Sars G.O., 1905 [WoRMS]
Calanidae Dana, 1849 [WoRMS]
Calanoida [WoRMS]
Calocalanus pavo (Dana, 1852) [WoRMS]
Candaciidae Giesbrecht, 1893 [WoRMS]
Centropagidae Giesbrecht, 1893 [WoRMS]
Copepoda [WoRMS]
Eucalanidae Giesbrecht, 1893 [WoRMS]
Euchaetidae Giesbrecht, 1893 [WoRMS]
Eumalacostraca [WoRMS]
Euphausiacea [WoRMS]
Evadne Lovén, 1836 [WoRMS]
Foraminifera [WoRMS]
Heterorhabdidae Sars G.O., 1902 [WoRMS]
Hyperiidea [WoRMS]
Oithonidae Dana, 1853 [WoRMS]
Penilia Dana, 1852 [WoRMS]
Phaeodaria [WoRMS]
Pyrocystaceae (Schütt, 1896) Lemmermann, 1899 [WoRMS]
Rhizaria [WoRMS]
Temoridae Giesbrecht, 1893 [WoRMS]
Tomopteridae Grube, 1850 [WoRMS]

Contributors
European Molecular Biology Laboratory (EMBL), moredata creator
Sorbonne Université, moredata creator
Sorbonne Université; Sorbonne Université/CNRS, Institut de la Mer de Villefranche (IMEV), moredata creator
Sorbonne Université; Sorbonne Université/CNRS, Laboratoire d'Océanographie de Villefranche (LOV), moredata providerdata creator
Sorbonne Université; Sorbonne Université/CNRS, Station Biologique de Roscoff (SBR), moredata creator
Tara Oceans Consortium, moredata creator
University of Bremen; Centre for Marine Environmental Sciences (MARUM), moredata creator

Related datasets
Published in:
EurOBIS: European Ocean Biodiversity Information System, more


Dataset status: In Progress
Data type: Data
Data origin: Research
Metadatarecord created: 2020-05-25
Information last updated: 2020-12-10
All data in the Integrated Marine Information System (IMIS) is subject to the VLIZ privacy policy