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Prof. Van de Peer, Yves
bioinformatics.psb.ugent.be/people/profile/66, personal home page
orcid.org/0000-0003-4327-3730, orcid
www.researcherid.com/rid/D-4388-2009, researcherid

Institutes (2)  Top | Institutes | Publications | Project 
  • Flanders Institute for Biotechnology; Department of Plant systems biology (PSB), more
  • Function: Professor

    Direct contact at institute:
    Tel.: +32-(0)9-331 38 07
    E-mail:
  • Universiteit Gent; Faculteit Wetenschappen; Department of Plant Biotechnology and Bioinformatics, more
  • Direct contact at institute:
    E-mail:
 

Project  Top | Institutes | Publications | Project 
  • The Algal Microbiome: Friends and Foes, more

Publications (30)  Top | Institutes | Publications | Project 
    ( 29 peer reviewed ) split up
  • Peer reviewed article Ahmed, S.; Cock, J.M.; Pessia, E.; Luthringer, R.; Cormier, A.; Robuchon, M.; Sterck, L.; Peters, A.F.; Dittami, S.M.; Corre, E.; Valero, M.; Aury, J.-M.; Roze, D.; Van de Peer, Y.; Bothwell, J.; Marais, G.A.B.; Coelho, S.M. (2014). A haploid system of sex determination in the brown alga Ectocarpus sp. Curr. Biol. 24(17): 1945-1957. hdl.handle.net/10.1016/j.cub.2014.07.042, more
  • Peer reviewed article Blanc-Mathieu, R.; Verhelst, B.; Derelle, E.; Rombauts, S.; Bouget, F.-Y.; Carré, I.; Château, A.; Eyre-Walker, A.; Grimsley, N.; Moreau, H.; Piégu, B.; Rivals, E.; Schackwitz, W.; Van de Peer, Y.; Piganeau, G. (2014). An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. BMC Genom. 15. hdl.handle.net/10.1186/1471-2164-15-1103, more
  • Peer reviewed article Bowler, C.; Allen, A.E.; Badger, J.H.; Grimwood, J.; Jabbari, K.; Kuo, A.; Maheswari, U.; Martens, C.; Maumus, F.; Otillar, R.P.; Rayko, E.; Salamov, A.A.; Vandepoele, K.; Beszteri, B.; Gruber, A.; Heijde, M.; Katinka, M.; Mock, T.; Valentin, K.; Verret, F.; Berges, J.A.; Brownlee, C.; Cadoret, J.-P.; Chiovitti, A.; Choi, C.J.; Coesel, S.; De Martino, A.; Detter, J.C.; Durkin, C.; Falciatore, A.; Fournet, J.; Haruta, M.; Huysman, M.J.J.; Jenkins, B.D.; Jiroutova, K.; Jorgensen, R.E.; Joubert, Y.; Kaplan, A.; Kröger, N.; Kroth, P.G.; La Roche, J.; Lindquist, E.; Lommer, M.; Martin-Jézéquel, V.; Lopez, P.J.; Lucas, S.; Mangogna, M.; McGinnis, K.; Medlin, L.K.; Montsant, A.; Oudot-Le Secq, M.-P.; Napoli, C.; Obornik, M.; Parker, M.S.; Petit, J.-L.; Porcel, B.M.; Poulsen, N.; Robison, M.; Rychlewsk, L.; Rynearson, T.A.; Schmutz, J.; Shapiro, H.; Siaut, M.; Stanley, M.; Sussman, M.R.; Taylor, A.R.; Vardi, A.; von Dassow, P.; Vyverman, W.; Willis, A.; Wyrwicz, L.S.; Rokhsar, D.; Weissenbach, J.; Armbrust, E.V.; Green, B.R.; Van de Peer, Y.; Grigoriev, I.V. (2008). The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature (Lond.) 456(7219): 239-244. dx.doi.org/10.1038/nature07410, more
  • Peer reviewed article Cock, J.M.; Sterck, L.; Rouzé, P.; Scornet, D.; Allen, A.E.; Amoutzias, G.; Anthouard, V.; Artiguenave, F.; Aury, J.-M.; Badger, J.H.; Beszteri, B.; Billiau, K.; Bonnet, E.; Bothwell, J.H.; Bowler, C.; Boyen, C.; Brownlee, C.; Carrano, C.J.; Charrier, B.; Cho, G.Y.; Coelho, S.M.; Collén, J.; Corre, E.; Da Silva, C.; Delage, L.; Delaroque, N.; Dittami, S.M.; Doulbeau, S.; Elias, M.; Farnham, G.; Gachon, C.M.M.; Gschloessl, B.; Heesch, S.; Jabbari, K.; Jubin, C.; Kawai, H.; Kimura, K.; Kloareg, B.; Küpper, F.C.; Lang, D.; Le Bail, A.; Leblanc, C.; Lerouge, P.; Lohr, M.; Lopez, P.J.; Martens, C.; Maumus, F.; Michel, G.; Miranda-Saavedra, D.; Morales, J.; Moreau, H.; Motomura, T.; Nagasato, C.; Napoli, C.A.; Nelson, D.R.; Nyvall-Collén, P.; Peters, A.F.; Pommier, C.; Potin, Ph.; Poulain, J.; Quesneville, H.; Read, B.; Rensing, S.A.; Ritter, A.; Rousvoal, S.; Samanta, M.; Samson, G.; Schroeder, D.C.; Segurens, B.; Strittmatter, M.; Tonon, T.; Tregear, J.W.; Valentin, K.; von Dassow, P.; Yamagishi, T.; Van de Peer, Y.; Wincker, P. (2010). The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature (Lond.) 465(7298): 617-621. hdl.handle.net/10.1038/nature09016, more
  • Peer reviewed article Cock, J.M.; Collén, J.; Sterck, L.; Rouzé, P.; Scornet, D.; Anthouard, V.; Artiguenave, F.; Aury, J.-M.; Billiau, K.; Bonnet, E.; Bothwell, J.H.F.; Brillet, L.; Carre, W.; Coelho, S.M.; Corre, E.; Da Silva, C.; Jubin, C.; Martens, C.; Maumus, F.; Miranda-Saavedra, D.; Peters, A.F.; Porcel, B.; Quesneville, H.; Boyen, C.; Van de Peer, Y.; Wincker, P. (2011). Nature, nurture and the structure of macroalgal genomes. Eur. J. Phycol. 46(Supplement 1): 39, more
  • Peer reviewed article Cock, J.M.; Sterck, L.; Ahmed, S.; Allen, A.E.; Amoutzias, G.; Anthouard, V.; Artiguenave, F.; Arun, A.; Aury, J.M.; Badger, J.H.; Beszteri, B.; Billiau, K.; Bonnet, E.; Bothwell, J.H.; Bowler, C.; Boyen, C.; Brownlee, C.; Carrano, C.J.; Charrier, B.; Cho, G.Y.; Coelho, S.M.; Collen, J.; Le Corguille, G.; Corre, E.; Dartevelle, L.; Da Silva, C.; Delage, L.; Delaroque, N.; Dittami, S.M.; Doulbeau, S.; Elias, M.; Farnham, G.; Gachon, C.M.M.; Godfroy, O.; Gschloessl, B.; Heesch, S.; Jabbari, K.; Jubin, C.; Kawai, H.; Kimura, K.; Kloareg, B.; Kuepper, F.C.; Lang, D.; Le Bail, A.; Luthringer, R.; Leblanc, C.; Lerouge, P.; Lohr, M.; Lopez, P.J.; Macaisne, N.; Martens, C.; Maumus, F.; Michel, G.; Miranda-Saavedra, D.; Morales, J.; Moreau, H.; Motomura, T.; Nagasato, C.; Napoli, C.A.; Nelson, D.R.; Nyvall-Collen, P.; Peters, A.F.; Pommier, C.; Potin, P.; Poulain, J.; Quesneville, H.; Read, B.; Rensing, S.A.; Ritter, A.; Rousvoal, S.; Samanta, M.; Samson, G.; Schroeder, D.C.; Scornet, D.; Segurens, B.; Strittmatter, M.; Tonon, T.; Tregear, J.W.; Valentin, K.; Von Dassow, P.; Yamagishi, T.; Rouzé, P.; Van de Peer, Y.; Wincker, P.; Ectocarpus Genome Consortium (2012). The Ectocarpus genome and brown algal genomics: the Ectocarpus Genome Consortium, in: Bourgougnon, N. (Ed.) Genomic insights into the biology of Algae. Advances in Botanical Research, 64: pp. 141-184. dx.doi.org/10.1016/B978-0-12-391499-6.00005-0, more
  • Peer reviewed article Cock, M.; Scornet, D.; Peters, F.; Sterck, L.; Rouzé, P.; van de Peer, Y.; Weissenbach, J.; Wincker, P. (2009). Evloution of multi cellularity in the heterokont lineage: analysis of the Ectocarpus siliculosus genome sequence. Phycologia 48(4): 22-22, more
  • Peer reviewed article Derelle, E.; Ferraz, C.; Rombauts, S.; Rouzé, P.; Worden, A.Z.; Robbens, S.; Partensky, F.; Degroeve, S.; Echeynié, S.; Cooke, R.; Saeys, Y.; Wuyts, J.; Jabbari, K.; Bowler, C.; Panaud, O.; Piégu, B.; Ball, S.G.; Ral, J.-P.; Bouget, F.-Y.; Piganeau, G.; De Baets, B.; Picard, A.; Delseny, M.; Demaille, J.; Van de Peer, Y.; Moreau, H. (2006). Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. U.S.A. 103(31): 11647-11652. dx.doi.org/10.1073/pnas.0604795103, more
  • Peer reviewed article Dittami, S.M.; Scornet, D.; Petit, J.-L.; Segurens, B.; Da Silva, C.; Corre, E.; Dondrup, M.; Glatting, K.-H.; König, R.; Sterck, L.; Rouzé, P.; Van de Peer, Y.; Cock, J.M.; Boyen, C.; Tonon, T. (2009). Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress. Genome Biol. 10(6): R66. hdl.handle.net/10.1186/gb-2009-10-6-r66, more
  • Peer reviewed article Hendriks, L.; Van de Peer, Y.; Van Herck, M.; Neefs, J.-M.; De Wachter, R. (1990). The 18S ribosomal RNA sequence of the sea anemone Ammonia sulcata and its evolutionary position among other eukaryotes. FEBS Lett. 269(2): 445-449. dx.doi.org/10.1016/0014-5793(90)81212-7, more
  • Peer reviewed article Hendriks, L.; De Baere, R.; Van de Peer, Y.; Neefs, J.; Goris, A.; De Wachter, R. (1991). The evolutionary position of the rhodophyte Porphyra umbilicalis and the basidiomycete Leucosporidium scottii among other eukaryotes as deduced from complete sequences of small ribosomal subunit RNA. J. Mol. Evol. 32(2): 167-177. dx.doi.org/10.1007/BF02515389, more
  • Huysman, M.J.J.; Martens, C.; Gillard, J.; Vandepoele, K.; Inzé, D.; Van de Peer, Y.; Vyverman, W. (2009). Regulation of the cell cycle in the diatom Phaeodactylum tricornutum, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium 6 March 2009: book of abstracts. VLIZ Special Publication, 41: pp. 49, more
  • Peer reviewed article Huysman, M.J.J.; Martens, C.; Vandepoele, K.; Gillard, J.; Rayko, E.; Heijde, M.; Bowler, C.; Inzé, D.; Van de Peer, Y.; De Veylder, L.; Vyverman, W. (2010). Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling. Genome Biol. 11(2): 19 pp. hdl.handle.net/10.1186/gb-2010-11-2-r17, more
  • Peer reviewed article John, U.; Beszteri, B.; Derelle, E.; Van de Peer, Y.; Read, B.; Moreau, H.; Cembella, A. (2008). Novel insights into evolution of protistan polyketide synthases through phylogenomic analysis. Protist 159(1): 21-30. dx.doi.org/10.1016/j.protis.2007.08.001, more
  • Peer reviewed article Khadaroo, B.; Robbens, S.; Ferraz, C.; Derelle, E.; Eychenie, S.; Cooke, R.; Peaucellier, G.; Delseny, M.; Demaille, J.; Van de Peer, Y.; Picard, A.; Moreau, H. (2004). The first green lineage cdc25 dual-specificity phosphatase. Cell Cycle 3(4): 513-518, more
  • Peer reviewed article Král'ová, I.; Van de Peer, Y.; Jirku, M.; Van Ranst, M.; Scholz, T.; Lukeš, J. (1997). Phylogenetic analysis of a fish tapeworm, Proteocephalus exiguus, based on the small subunit rRNA gene. Molecular and Biochemical Parasitology 84(2): 263-266. dx.doi.org/10.1016/S0166-6851(96)02809-5, more
  • Peer reviewed article Martens, C.; Vandepoele, K.; Van de Peer, Y. (2008). Whole-genome analysis reveals molecular innovations and evolutionary transitions in chromalveolate species. Proc. Natl. Acad. Sci. U.S.A. 105(9): 3427-3432, more
  • Peer reviewed article Moreau, H.; Verhelst, B.; Couloux, A.; Derelle, E.; Rombauts, S.; Grimsley, N.; Van Bel, M.; Poulain, J.; Katinka, M.; Hohmann-Marriott, M.; Piganeau, G.; Rouzé, P.; Da Silva, C.; Wincker, P.; Van de Peer, Y.; Vandepoele, K. (2012). Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage. Genome Biol. 13(8). dx.doi.org/10.1186/gb-2012-13-8-r74, more
  • Peer reviewed article Olsen, J.L.; Rouzé, P.; Verhelst, B.; Lin, Y.-C.; Bayer, T.; Collén, J.; Dattolo, E.; De Paoli, E.; Dittami, S.; Maumus, F.; Michel, G.; Kersting, A.; Lauritano, C.; Lohaus, R.; Töpel, M.; Tonon, T.; Vanneste, K.; Amirebrahimi, M.; Brakel, J.; Boström, C.; Chovatia, M.; Grimwood, J.; Jenkins, J.W.; Jueterbock, A.; Mraz, A.; Stam, W.T.; Tice, H.; Bornberg-Bauer, E.; Green, P.J.; Pearson, G.A.; Procaccini, G.; Duarte, C.M.; Schmutz, J.; Reusch, T.B.H.; Van de Peer, Y. (2016). The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea. Nature (Lond.) 530(7590): 331-335. hdl.handle.net/10.1038/nature16548, more
  • Peer reviewed article Palenik, B.; Grimwood, J.; Aerts, A.; Rouzé, P.; Salamov, A.; Putnam, N.; Dupont, C.; Jorgensen, R.; Derelle, E.; Rombauts, S.; Zhou, K.; Otillar, R.; Merchant, S.S.; Podell, S.; Gaasterland, T.; Napoli, C.; Gendler, K.; Manuell, A.; Tai, V.; Vallon, O.; Piganeau, G.; Jancek, S.; Heijde, M.; Jabbari, K.; Bowler, C.; Lohr, M.; Robbens, S.; Werner, G.; Dubchak, I.; Pazour, G.J.; Ren, Q.; Paulsen, I.; Delwiche, C.; Schmutz, J.; Rokhsar, D.; Van de Peer, Y.; Moreau, H.; Grigoriev, I.V. (2007). The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc. Natl. Acad. Sci. U.S.A. 104(18): 7705-7710. dx.doi.org/10.1073/pnas.0611046104, more
  • Peer reviewed article Piganeau, G.; Vandepoele, K.; Gourbière, S.; Van de Peer, Y.; Moreau, H. (2009). Unravelling cis-regulatory elements in the genome of the smallest photosynthetic Eukaryote: phylogenetic footprinting in Ostreococcus. J. Mol. Evol. 69(3): 249-259, more
  • Peer reviewed article Read, B.A.; Kegel, J.; Klute, M.J.; Kuo, A.; Lefebvre, S.C.; Maumus, F.; Mayer, C.; Miller, J.; Monier, A.; Salamov, A.; Young, J.; Aguilar, M.; Claverie, J.-M.; Frickenhaus, S.; Gonzalez, K.; Herman, E.K.; Lin, Y.-C.; Napier, J.; Ogata, H.; Sarno, A.F.; Schmutz, J.; Schroeder, D.; de Vargas, C.; Verret, F.; von Dassow, P.; Valentin, K.; Van de Peer, Y.; Wheeler, G.; Emiliania huxleyi Annotation Consortium; Dacks, J.B.; Delwiche, C.F.; Dyhrman, S.T.; Glöckner, G.; John, U.; Richards, T.; Worden, A.Z.; Zhang, X.; Grigoriev, I.V. (2013). Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature (Lond.) 499(7457): 209-213. hdl.handle.net/10.1038/nature12221, more
  • Peer reviewed article Rensing, S.; Obrdlik, P.; Rober-Kleber, N.; Müller, S.; Hofmann, C.; Van de Peer, Y.; Maier, U.-G. (1997). Molecular phylogeny of the stress-70 protein family with reference to algal relationships. Eur. J. Phycol. 32(3): 279-285. hdl.handle.net/10.1080/09670269710001737199, more
  • Peer reviewed article Robbens, S.; Khadaroo, B.; Camasses, A.; Derelle, E.; Ferraz, C.; Inzé, D.; Van de Peer, Y.; Moreau, H. (2005). Genome-wide analysis of core cell cycle genes in the unicellular green alga Ostreococcus tauri. Mol. Biol. Evol. 22(3): 589-597. dx.doi.org/10.1093/molbev/msi044, more
  • Peer reviewed article Robbens, S.; Derelle, E.; Ferraz, C.; Wuyts, J.; Moreau, H.; Van de Peer, Y. (2007). The complete chloroplast and mitochondrial DNA sequence of Ostreococcus tauri: organelle genomes of the smallest eukaryote are examples of compaction. Mol. Biol. Evol. 24(4): 956-968. dx.doi.org/10.1093/molbev/msm012, more
  • Peer reviewed article Robbens, S.; Petersen, J.; Brinkmann, H.; Rouzé, P.; Van de Peer, Y. (2007). Unique regulation of the Calvin cycle in the ultrasmall green alga Ostreococcus. J. Mol. Evol. 64(5): 601-604. dx.doi.org/10.1007/s00239-006-0159-y, more
  • Peer reviewed article Saltykova, A.; Pulido-Tamayo, S.; Pazoutova, M.; Rensing, S.; Nishiyama, T.; Van de Peer, Y.; Marchal, K.; Rombauts, S. (2015). Identifying prokaryotic consortia that live in close interactions with algae. Eur. J. Phycol. 50(Supplement 1): 145-146, more
  • Peer reviewed article Verhelst, B.; Van de Peer, Y.; Rouzé, P. (2013). The complex intron landscape and massive intron invasion in a picoeukaryote provides insights into intron evolution. Genome Biology and Evolution 5(12): 2393-2401. dx.doi.org/10.1093/gbe/evt189, more
  • Peer reviewed article Wilmotte, A.; Turner, S.; Van de Peer, Y.; Pace, N.R. (1992). Taxonomic study of marine oscillatoriacean strains (Cyanobacteria) with narrow trichomes. II. Nucleotide sequence analysis of the 16S ribosomal RNA. J. Phycol. 28(6): 828-838. dx.doi.org/10.1111/j.0022-3646.1992.00828.x, more
  • Peer reviewed article Worden, A.Z.; Lee, J.-H.; Mock, T.; Rouzé, P.; Simmons, M.P.; Aerts, A.L.; Allen, A.E.; Cuvelier, M.L.; Derelle, E.; Everett, M.V.; Foulon, E.; Grimwood, J.; Gundlach, H.; Henrissat, B.; Napoli, C.; McDonald, S.M.; Parker, M.S.; Rombauts, S.; Salamov, A.; von Dassow, P.; Badger, J.H.; Coutinho, P.M.; Demir, E.; Dubchak, I.; Gentemann, C.; Eikrem, W.; Gready, J.E.; John, U.; Lanier, W.; Lindquist, E.A.; Lucas, S.; Mayer, K.F.X.; Moreau, H.; Not, F.; Otillar, R.; Panaud, O.; Pangilinan, J.; Paulsen, I.; Piégu, B.; Poliakov, A.; Robbens, S.; Schmutz, J.; Toulza, E.; Wyss, T.; Zelensky, A.; Zhou, K.; Armbrust, E.V.; Bhattacharya, D.; Goodenough, U.W.; Van de Peer, Y.; Grigoriev, I.V. (2009). Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science (Wash.) 324(5924): 268-272. hdl.handle.net/10.1126/science.1167222, more

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