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Prof. Dr Herndl, Gerhard
orcid.org/0000-0002-2223-2852, orcid
www.researcherid.com/rid/B-1513-2013, researcherid

Institute  Top | Institute | Publications 
    Koninklijk Nederlands Instituut voor Onderzoek der Zee (NIOZ), more
    Function: Scientist

    Direct contact at institute:
    Tel.: +31-(0)222-369 35 07
    E-mail:
 

Publications (57)  Top | Institute | Publications 
    ( 50 peer reviewed ) split up
  • Peer reviewed article Agogue, H.; Lamy, D.; Neal, P.R.; Sogin, M.L.; Herndl, G.J. (2011). Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing. Mol. Ecol. 20(2): 258-274. dx.doi.org/10.1111/j.1365-294X.2010.04932.x, more
  • Peer reviewed article Agogué, H.; Brink, M.; Herndl, G.J. (2008). Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic. Nature (Lond.) 456(7223): 788-791, more
  • Amaral-Zettler, L.; Artigas, L.F.; Baross, J.A.; Bharathi, P.A.L.; Boetius, A.; Chandramohan, D.; Herndl, G.J.; Kogure, K.; Neal, P.R.; Pedrós-Alió, C.; Ramette, A.; Schouten, S.; Stal, L.J.; Thessen, A.; de Leeuw, J.W.; Sogin, M.L. (2010). A global census of marine microbes, in: Mcintyre, A.D. (Ed.) Life in the world's oceans: diversity, distribution, and abundance. pp. 223-245, more
  • Peer reviewed article Arrieta, J.M.; Mayol, E.; Hansman, R.L.; Herndl, G.J.; Dittmar, T.; Duarte, C.M. (2015). Response to Comment on "Dilution limits dissolved organic carbon utilization in the deep ocean". Science (Wash.) 350(6267): 1483-1483. hdl.handle.net/10.1126/science.aac7249, more
  • Peer reviewed article Arrieta, J.M.; Mayol, E.; Hansman, R.L.; Herndl, G.J.; Dittmar, T.; Duarte, C.M. (2015). Dilution limits dissolved organic carbon utilization in the deep ocean. Science (Wash.) 348(6232): 331-333. hdl.handle.net/10.1126/science.1258955, more
  • Peer reviewed article Assmy, P.; Smetacek, V.; Klaas, C.; Henjes, J.; Strass, V.H.; Arrieta, J.M.; Bathmann, U.; Cisewski, B.; Fuchs, N.; Herndl, G.J. (2013). Thick-shelled, grazer-protected diatoms decouple ocean carbon and silicon cycles in the iron-limited Antarctic Circumpolar Current. Proc. Natl. Acad. Sci. U.S.A. 110(51): 20633–20638. hdl.handle.net/10.1073/pnas.1309345110, more
  • Peer reviewed article Baltar, F.; Aristegui, J.; Gasol, J.M.; Herndl, G.J. (2012). Microbial Functioning and Community Structure Variability in the Mesopelagic and Epipelagic Waters of the Subtropical Northeast Atlantic Ocean. Appl. Environ. Microbiol. 78(9): 3309-3316. dx.doi.org/10.1128/AEM.07962-11, more
  • Peer reviewed article Baltar, F.; Arístegui, J.; Gasol, J.M.; Yokokawa, T.; Herndl, G.J. (2013). Bacterial Versus Archaeal Origin of Extracellular Enzymatic Activity in the Northeast Atlantic Deep Waters. Microb. Ecol. 65(2): 277-288. dx.doi.org/10.1007/s00248-012-0126-7, more
  • Peer reviewed article Baltar, F.; Reinthaler, T.; Herndl, G.J.; Pinhassi, J. (2013). Major Effect of Hydrogen Peroxide on Bacterioplankton Metabolism in the Northeast Atlantic. PLoS One 8(4). dx.doi.org/10.1371/journal.pone.0061051, more
  • Peer reviewed article Baltar, F.; Lundin, D.; Palovaara, J.; Lekunberri, I.; Reinthaler, T.; Herndl, G.; Pinhassi, J. (2016). Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic. Front. Microbiol. 7: 1670. dx.doi.org/10.3389/fmicb.2016.01670, more
  • Peer reviewed article Bayer, B.; Vojvoda, J.; Offre, P.; Alves, R.J.E.; Elisabeth, N.H.; Garcia, J.A.L.; Volland, J.-M.; Srivastava, A.; Schleper, C.; Herndl, G. (2016). Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation. ISME J. 10: 1051-1063. dx.doi.org/10.1038/ismej.2015.200, more
  • Peer reviewed article Bergauer, K.; Sintes, E.; van Bleijswijk, J.; Witte, H.; Herndl, G.J. (2013). Abundance and distribution of archaeal acetyl-CoA/propionyl-CoA carboxylase genes indicative for putatively chemoautotrophic Archaea in the tropical Atlantic's interior. FEMS Microbiol. Ecol. 84(3): 461-473. dx.doi.org/10.1111/1574-6941.12073, more
  • Peer reviewed article Bochdansky, A.B.; Clouse, M.A.; Herndl, G. (2016). Dragon kings of the deep sea: marine particles deviate markedly from the common number-size spectrum. NPG Scientific Reports 6(22633): 7 pp. hdl.handle.net/10.1038/srep22633, more
  • Peer reviewed article Calleja, M.L.; Duarte, C.M.; Álvarez, M.; Vaquer-Sunyer, R.; Agustí, S.; Herndl, G.J. (2013). Prevalence of strong vertical CO2 and O2 variability in the top meters of the ocean. Global Biogeochem. Cycles 27: 941–949. hdl.handle.net/10.1002/gbc.20081, more
  • Peer reviewed article de Corte, D.; Sintes, E.; Yokokawa, T.; Herndl, G.J.; de Corte, D. (2011). Changes in viral and bacterial communities during the ice-melting season in the coastal Arctic (Kongsfjorden, Ny-Ålesund). Environ. Microbiol. 13(7): 1827-1841. dx.doi.org/10.1111/j.1462-2920.2011.02497.x, more
  • Peer reviewed article De Corte, D.; Sintes, E.; Yokokawa, T.; Reinthaler, T.; Herndl, G.J. (2012). Links between viruses and prokaryotes throughout the water column along a North Atlantic latitudinal transect. ISME J. 6(8): 1566-1577. dx.doi.org/10.1038/ismej.2011.214, more
  • Peer reviewed article De Corte, D.; Sintes, E.; Yokokawa, T.; Herndl, G.; De Corte, D. (2013). Comparison between MICRO-CARD-FISH and 16S rRNA gene clone libraries toassess the active versus total bacterial community in the coastal Arctic. Environmental Microbiology Reports 5(2): 272-281. dx.doi.org/10.1111/1758-2229.12013, more
  • Peer reviewed article De Corte, D.; Lekunberri, I.; Sintes, E.; Garcia, J.A.L.; Gonzalez, S.; Herndl, G.J. (2014). Linkage between copepods and bacteria in the North Atlantic Ocean. Aquat. Microb. Ecol. 72: 215-225. hdl.handle.net/10.3354/ame01696, more
  • Peer reviewed article De Corte, D.; Sintes, E.; Yokokawa, T.; Lekunberri, I.; Herndl, G. (2016). Large-scale distribution of microbial and viral populations in the South Atlantic Ocean. Environmental Microbiology Reports 8(2): 305-315. dx.doi.org/10.1111/1758-2229.12381, more
  • Peer reviewed article Debeljak, P.; Proietti, M.; Reisser, J.; Ferrari, F.F.; Abbas, B.; van Loosdrecht, M.C.M.; Slat, B.; Herndl, G.J. (2017). Extracting DNA from ocean microplastics: a method comparison study. Anal. Methods 9(9): 1521-1526. https://dx.doi.org/10.1039/C6AY03119F, more
  • Peer reviewed article Elling, F.J.; Könneke, M.; Nicol, G.W.; Stieglmeier, M.; Bayer, B.; Spieck, E.; de la Torre, J.R.; Becker, K.W.; Thomm, M.; Prosser, J.I.; Herndl, G.J.; Schleper, C.; Hinrichs, K.-U. (2017). Chemotaxonomic characterisation of the thaumarchaeal lipidome. Environ. Microbiol. 19(7): 2681-2700. https://doi.org/10.1111/1462-2920.13759, more
  • Peer reviewed article Frade, P.R.; Schwaninger, V.; Glasl, B.; Sintes, E.; Hill, R.W.; Simó, R.; Herndl, G. (2016). Dimethylsulfoniopropionate in corals and its interrelations with bacterial assemblages in coral surface mucus. Environ. Chem. 13: 252–265. dx.doi.org/10.1071/EN15023, more
  • Peer reviewed article Frade, P.R.; Roll, K.; Bergauer, K.; Herndl, G. (2016). Archaeal and Bacterial Communities Associated with the Surface Mucus of Caribbean Corals Differ in Their Degree of Host Specificity and Community Turnover Over Reefs. PLoS One 11(1): e0144702. dx.doi.org/10.1371/journal.pone.0144702, more
  • Peer reviewed article Frank, A.H.; Garcia, J.A.L.; Herndl, G.; Reinthaler, T. (2016). Connectivity between surface and deep waters determines prokaryotic diversity in the North Atlantic Deep Water. Environ. Microbiol. 18(6): 2052–2063. dx.doi.org/10.1111/1462-2920.13237, more
  • Peer reviewed article Frank, A.H.; Pontiller, B.; Herndl, G.; Reinthaler, T. (2016). Erythromycin and GC7 fail as domain-specific inhibitors for bacterial and archaeal activity in the open ocean . Aquat. Microb. Ecol. 77: 99-110. dx.doi.org/10.3354/ame01792, more
  • Gasol, J.M.; Lebaron, P.; Herndl, G.J.; Hagström, Å.; Bordat, P.; Weinbauer, M.; Archer, S.D.; Pernthaler, J.; Fuchs, B.; Thingstad, T.F.; Heldal, M.; Burkill, P.H.; Zubkov, M.V. (2004). Bacterial single-cell approaches to the relationship between diversity and function in the sea (BASICS), in: European Conference on Marine Science and Ocean Technology. Celebrating European marine science: building the European research area: communicating marine science, 10th - 13th May 2004, Galway, Ireland: abstract book. pp. 8-9, more
  • Gasol, J.M.; Lebaron, P.; Herndl, G.J.; Hagström, Å.; Bordat, P.; Weinbauer, M.; Archer, S.D.; Pernthaler, J.; Fuchs, B.; Thingstad, T.F.; Heldal, M.; Burkill, P.H.; Zubkov, M.V. (2007). Bacterial single-cell approaches to the relationschip between diversity and function in the sea (BASICS), in: Cieslikiewicz, W. et al. (Ed.) Proceedings of the EurOCEAN 2004: European Conference on Marine Science & Ocean Technology: Celebrating European marine science; building the European research area; communicating marine science, Galway, Ireland, 10-13 May 2004. pp. 144-145, more
  • Peer reviewed article Glasl, B.; Herndl, G.; Frade, P.R. (2016). The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance. ISME J. 10: 2280–2292. dx.doi.org/10.1038/ismej.2016.9, more
  • Peer reviewed article Glasl, B.; Bongaerts, P.; Elisabeth, N.H.; Hoegh-Guldberg, O.; Herndl, G.J.; Frade, P.R. (2017). Microbiome variation in corals with distinct depth distribution ranges across a shallow–mesophotic gradient (15–85 m). Coral Reefs 36: 447-452. https://dx.doi.org/10.1007/s00338-016-1517-x, more
  • Peer reviewed article Hansman, R.L.; Dittmar, T.; Herndl, G.J. (2015). Conservation of dissolved organic matter molecular composition during mixing of the deep water masses of the northeast Atlantic Ocean. Mar. Chem. 177: 288–297. dx.doi.org/10.1016/j.marchem.2015.06.001, more
  • Heip, C.H.R.; Brandt, A.; Gattuso, J.P.; Antia, A.; Berger, W.H.; Boissonnas, J.; Burkill, P.H.; d'Ozouville, L.; Graf, G.; Herndl, G.J.; Patching, J.; Reise, K.; Riou, G.; Simó, R.; Smetacek, V.; Wassmann, P. (2003). Ecosystem functioning and biodiversity, in: Wefer, G. et al. (Ed.) Marine science frontiers for Europe. pp. 289-302, more
  • Peer reviewed article Herndl, G.J.; Reinthaler, T. (2013). Microbial control of the dark end of the biological pump. Nature Geoscience 6(9): 718-724. dx.doi.org/10.1038/NGEO1921, more
  • Herndl, G.J.; Weinbauer, M.G. (2003). Marine microbial food web structure and function, in: Wefer, G. et al. (Ed.) Marine science frontiers for Europe. pp. 265-277, more
  • Peer reviewed article Köstner, N.; Scharnreitner; Jürgens; Labrenz; Herndl, G.J.; Winter (2017). High viral abundance as a consequence of low viral decay in the Baltic Sea redoxcline. PLoS One 12(6): e0178467. https://hdl.handle.net/10.1371/journal.pone.0178467, more
  • Peer reviewed article Landry, Z.; Swan, B.K.; Herndl, G.J.; Stepanauskas, R.; Giovannonia, S.J. (2017). SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation ofRecalcitrant Dissolved Organic Matter. Mbio 8(2): e00413-17. https://dx.doi.org/10.1128/mBio.00413-17, more
  • Lebaron, P.; Herndl, G.J.; Saliot, A.; Albaiges, J.; Bordat, P.C. (2004). Structure and role of biological communities involved in the transport and transformation of persistent pollutants at the marine AIR-Water Interface (AIRWIN), in: European Conference on Marine Science and Ocean Technology. Celebrating European marine science: building the European research area: communicating marine science, 10th - 13th May 2004, Galway, Ireland: abstract book. pp. 61-62, more
  • Lebaron, P.; Herndl, G.J.; Saliot, A.; Albaiges, J.; Bordat, P.C. (2007). Structure and role of biological communities involved in the transport and transformation of persistent pollutants at the marine AIR-Water Interface (AIRWIN), in: Cieslikiewicz, W. et al. (Ed.) Proceedings of the EurOCEAN 2004: European Conference on Marine Science & Ocean Technology: Celebrating European marine science; building the European research area; communicating marine science, Galway, Ireland, 10-13 May 2004. pp. 219-220, more
  • Peer reviewed article Lekunberri, I.; Sintes, E.; de Corte, D.; Yokokawa, T.; Herndl, G.J. (2013). Spatial patterns of bacterial and archaeal communities along the Romanche Fracture Zone (tropical Atlantic). FEMS Microbiol. Ecol. 85(3): 537-552. dx.doi.org/10.1111/1574-6941.12142, more
  • Peer reviewed article Llabres, M.; Agustí, S.; Herndl, G.J. (2011). Diel in situ picophytoplankton cell death cycles coupled with cell division. J. Phycol. 47(6): 1247-1257. dx.doi.org/10.1111/j.1529-8817.2011.01072.x, more
  • Peer reviewed article Llabrés, M.; Agusti, S.; Alonso-Laita, P.; Herndl, G.J. (2010). Synechococcus and Prochlorococcus cell death induced by UV radiation and the penetration of lethal UVR in the Mediterranean Sea. Mar. Ecol. Prog. Ser. 399: 27-37. dx.doi.org/10.3354/meps08332, more
  • Peer reviewed article Lønborg, C.; Yokokawa, T.; Herndl, G.J.; Alvarez-Salgado, X.A. (2015). Production and degradation of fluorescent dissolved organic matter in surface waters of the eastern north Atlantic ocean. Deep-Sea Res. Pt. A: Oceanogr. Res. Pap.A: Oceanogr. Res. Pap 96: 28–37. dx.doi.org/10.1016/j.dsr.2014.11.001, more
  • Peer reviewed article Malits, A.; Cattaneo, R.; Sintes, E.; Gasol, J.M.; Herndl, G.J.; Weinbauer, M.G. (2015). Potential impacts of black carbon on the marine microbial community. Aquat. Microb. Ecol. 75: 27-42. dx.doi.org/10.3354/ame01742, more
  • Peer reviewed article Morgan-Smith, D.; Herndl, G.J.; van Aken, H.M.; Bochdansky, A.B. (2011). Abundance of eukaryotic microbes in the deep subtropical North Atlantic. Aquat. Microb. Ecol. 65(2): 103-115. dx.doi.org/10.3354/ame01536, more
  • Peer reviewed article Muck, S.; Griessler, T.; Köstner, N.; Klimiuk, A.; Winter, C.; Herndl, G.J. (2014). Fracture zones in the Mid Atlantic Ridge lead to alterations in prokaryotic and viral parameters in deep-water masses. Front. Microbiol. 5: 264. hdl.handle.net/ 10.3389/fmicb.2014.00264, more
  • Peer reviewed article Muia, A.W.; Bretschko, G.; Herndl, G.J. (2011). An overview of the structure and function of microbial biofilms, withspecial emphasis on heterotrophic aquatic microbial communities. Afr. J. Aquat. Sci. 36(1): 1-10. dx.doi.org/10.2989/16085914.2011.562279, more
  • Peer reviewed article Parada, V.; Herndl, G.J.; Weinbauer, M.G. (2006). Viral burst size of heterotrophic prokaryotes in aquatic systems. J. Mar. Biol. Ass. U.K. 86(3): 613-621. dx.doi.org/10.1017/S002531540601352X, more
  • Peer reviewed article Piquet, A.M.-T.; Maat, D.S.; Confurius-Guns, V.; Sintes, E.; Herndl, G.; van de Poll, W.H.; Wiencke, C.; Buma, A.G.J.; Bolhuis, H. (2016). Springtime dynamics, productivity and activity of prokaryotes in two Arctic fjords. Polar Biol. 39: 1749–1763. dx.doi.org/10.1007/s00300-015-1866-x, more
  • Peer reviewed article Reinthaler, T.; Herndl, G.J.; Álvarez-Salgado, X.A.; Álvarez, M.; van Aken, H.M. (2013). Impact of water mass mixing on the biogeochemistry and microbiology of the Northeast Atlantic Deep Water. Global Biogeochem. Cycles 27(4): 1151–1162. hdl.handle.net/10.1002/2013GB004634, more
  • Peer reviewed article Sintes, E.; Witte, H.; Stodderegger, K.; Steiner, P.; Herndl, G.J. (2013). Temporal dynamics in the free-living bacterial community composition in the coastal North Sea. FEMS Microbiol. Ecol. 83(2): 413-424. dx.doi.org/10.1111/1574-6941.12003, more
  • Peer reviewed article Sintes, E.; Ouillon, N.; Herndl, G.J. (2015). Macroecological patterns of archaeal ammonia oxidizers in the Atlantic Ocean. Mol. Ecol. 24: 4931–4942 . dx.doi.org/10.1111/mec.13365, more
  • Peer reviewed article Sintes, E.; De Corte, D.; Haberleitner, E.; Herndl, G. (2016). Geographic Distribution of Archaeal Ammonia Oxidizing Ecotypes in the Atlantic Ocean. Front. Microbiol. 7: 77. dx.doi.org/10.3389/fmicb.2016.00077, more
  • Peer reviewed article Smetacek, V.; Klaas, C.; Strass, V.H.; Assmy, P.; Montresor, M.; Cisewski, B.; Savoye, N.; Webb, A.; d'Ovidio, F.; Arrieta, J.M.; Bathmann, U.; Bellerby, R.; Berg, G.M.; Croot, P.; Gonzalez, S.; Henjes, J.; Herndl, G.J.; Hoffmann, L.J.; Leach, H.; Losch, M.; Mills, M.M.; Neill, C.; Peeken, I.; Röttgers, R.; Sachs, O.; Sauter, E.; Schmidt, M.M.; Schwarz, J.; Terbrüggen, A.; Wolf-Gladrow, D. (2012). Deep carbon export from a Southern Ocean iron-fertilized diatom bloom. Nature (Lond.) 487(7407): 313-319. https://dx.doi.org/10.1038/nature11229, more
  • Peer reviewed article Thomas, H.; Craig, S.E.; Greenan, B.J.W.; Burt, W.; Herndl, G.J.; Higginson, S.; Salt, L.; Shadwick, E.H.; Urrego-Blanco, J. (2012). Direct observations of diel biological CO2 fixation on the Scotian Shelf, northwestern Atlantic Ocean. Biogeosciences 9(6): 2301-2309. dx.doi.org/10.5194/bg-9-2301-2012, more
  • Peer reviewed article Varela, M.M.; van Aken, H.M.; Sintes, E.; Reinthaler, T.; Herndl, G.J. (2011). Contribution of Crenarchaeota and Bacteria to autotrophy in the North Atlantic interior. Environ. Microbiol. 13(6): 1524-1533. dx.doi.org/10.1111/j.1462-2920.2011.02457.x, more
  • Peer reviewed article Winter, C.; Garcia, J.A.L.; Weinbauer, M.G.; DuBow, M.S.; Herndl, G.J. (2014). Comparison of Deep-Water Viromes from the Atlantic Ocean and the Mediterranean Sea. PLoS One 9(6): e100600 1-8. hdl.handle.net/10.1371/journal.pone.0100600, more
  • Peer reviewed article Yokokawa, T.; Sintes, E.; de Corte, D.; Olbrich, K.; Herndl, G.J. (2012). Differentiating leucine incorporation of Archaea and Bacteria throughout the water column of the eastern Atlantic using metabolic inhibitors. Aquat. Microb. Ecol. 66(3): 247-256. dx.doi.org/10.3354/ame01575, more
  • Peer reviewed article Zhang, Y.; Zhao, Z.; Dai, M.; Jiao, N.; Herndl, G.J. (2014). Drivers shaping the diversity and biogeography of total and active bacterial communities in the South China Sea. Mol. Ecol. 23(9): 2260-2274. dx.doi.org/10.1111/mec.12739, more

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