IMIS | Flanders Marine Institute
 

Flanders Marine Institute

Platform for marine research

IMIS

Publications | Institutes | Persons | Datasets | Projects | Maps
[ report an error in this record ]basket (0): add | show Print this page

Garbage in, garbage out
Bininda-Emonds, O.R.P.; Jones, K.E.; Price, S.A.; Cardillo, M.; Grenyer, R.; Purvis, A. (2004). Garbage in, garbage out, in: Bininda-Emonds, O.R.P. (Ed.) Phylogenetic Supertrees. pp. 267-280. https://hdl.handle.net/10.1007/978-1-4020-2330-9_13
In: Bininda-Emonds, O.R.P. (Ed.) (2004). Phylogenetic Supertrees. Springer Netherlands: Dordrecht. ISBN 978-1-4020-2328-6. XIV, 550 pp. https://hdl.handle.net/10.1007/978-1-4020-2330-9, more

Available in  Authors 

Author keywords
    character data; data non-independence; monophyly; paraphyly; source trees

Authors  Top 
  • Bininda-Emonds, O.R.P.
  • Jones, K.E.
  • Price, S.A.
  • Cardillo, M.
  • Grenyer, R.
  • Purvis, A.

Abstract
    As in conventional phylogenetic analyses, issues surrounding the source data are paramount in the supertree construction, but have received insufficient attention. In supertree construction, however, the source data represent phylogenetic trees rather than primary character data. This presents several supertree-specific problems. In this paper, we examine several key data issues for supertree construction, including data set non-independence, taxonomy of terminal taxa, and the question of what constitutes a valid source tree. Throughout, we present our suggested protocol for source tree collection and manipulation based on our experiences in building a supertree of mammals. Other protocols and decisions are naturally possible. What is important is that all collection protocols are presented explicitly and address minimally the issues that we have identified.

All data in the Integrated Marine Information System (IMIS) is subject to the VLIZ privacy policy Top | Authors