ALGADEC - Detection of toxic algae with a semi-automated nucleic acid biosensor
IntroductionMicroalgae are the major producers of biomass and organic compounds in the aquatic environment. Among the marine microalgae there are 97 toxic species (mainly dinoflagellates) known to have the potential to form "Harmful Algal Blooms", the so called HABs (Fig. 1).
Methods and techniques
In order to detect toxic algae in the field, a portable semi-automated nucleic acid biosensor was developed in the ALGADEC projectwww.algadec.net. This device enables the electrochemical detection of microalgae from water samples in less than two hours, without the need of expensive equipment. The detection of the toxic algae is carried out on a sensor chip and is based on the so-called sandwich hybridisation technique (Fig. 3). The ALGADEC detection device is semi-automatic. The main steps are executed automatically but filtering and a lysis procedure (digestion of the filtered material) has to be done by hand. The core of the biosensor is a multiprobe chip (Fig. 4) that can be used for the simultaneous detection of 14 different toxic algae plus two controls. Thus, it can be used to detect the species composition in harmful algal blooms.
A sandwich hybridisation is a molecular probe-based method for rapid target identification that uses two molecular probes targeting ribosomal RNA (rRNA). A capture probe bound to a solid surface immobilises the target ribosomal RNA and forms a hybrid complex with a second signal probe. An antibody-enzyme complex binds to the signal moiety of the signal probe and reacts with a substrate forming an electrochemical current on the biosensor (Metfies et al., 2005).
Molecular probes are short oligonucleotides (18-25 bases) that are complementary to specific sequences in the genomes of the target organism. Ribosomal RNA genes are widely used targets for the development of molecular probes. They appear in high numbers in target cells and have both conservative and highly variable regions, which make it possible to develop probes that are specific at different taxonomic levels (Groben et al., 2004).
The goal of ALGADEC was the automatic detection of the different toxic algae species in three different areas in Europe: Skagerrak in Norway, the Galician coast in Spain and the area of the Orkney Islands in Scotland. Thus, chip sets for different toxic algae have been developed and tested in the lab for specificity with cultures of known toxic and non-toxic varieties of the same species (Diercks et al., 2008). The applicability of the ALGADEC biosensor for the detection of toxic algae in the hands of lay persons was evalutated in a workshop with end users of the device. After an introduction of the end users to the handling manual, contaminated field samples from the Orkney Islands (UK) were successfully screened by the end users for the presence of cells from the genus Pseudonitzschia. Chip sets for the following toxic algae are currently available:
- Dinophysis sp.
- Pseudonitzschia sp.
- Lingolodinium polyedrum
- Chrysochromulina polylepis
In the course of the ALGADEC-project it was possible to develop a semi-automatic nucleic acid biosensor for the detection of toxic algae. The functionality of the device, even in the hands of lay persons, was shown with laboratory algae cultures, field samples spiked with algae cultures and field samples with naturally occurring toxic algae. However, in the future, the system has to be calibrated and optimised in respect to sensitivity for the detection of the target organisms. The sensitivity of the device is a crucial issue and has to be adapted, to the reference values for toxic algae e.g. toxic Alexandrium sp. in sea water of around ~100 – 250 cells/liter. The original idea of the ALGADEC project was to develop a nucleic acid biosensor for the detection of toxic algae. But the technology suggests an adaptation e.g. to the monitoring of microalgae in general. Therefore, molecular probes will be developed for key species of the phytoplankton of the North Sea. Furthermore, we are currently working on the automation of all steps involved in the analysis of water samples. In the long term a fully automated nucleic acid biosensor will be available that could work on its own or be implemented to the FerryBox-System in order to monitor microalgae autonomously at species level.