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understanding benthic, pelagic and air-borne ecosystem interactions in shallow coastal seas

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Ingesting, validating, long-term storage and access of Flow Cytometer data
CNRS; NERC-BODC; VLIZ; ICES (2019). Ingesting, validating, long-term storage and access of Flow Cytometer data. Deliverable D9.13. SeaDataCloud: [s.l.]. 43 pp.
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  • CNRS
  • NERC-BODC
  • VLIZ, meer
  • ICES
Abstract
    This document highlight the way to integrate the flow cytometry datasets into a database that fits interoperability and meets SDC ingesting procedure in order to make the datasets available through international portals. The works presents the first steps of standardisation of vocabulary dedicated to flow cytometry variables (optical units, abundance) and resolved functional groups (phytoplankton and heterotrophic prokaryotes) thanks to a consortium of international experts. The database and workflow from the sample to the SDC portal, ODV and EMODNET are presented, as well as the first datasets available online.
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Westbanks is a project Supported by the Belgian Science Policy (BELSPO): SSD Science for sustainable Development
General coordination: Magda Vincx & Jan Vanaverbeke
Hosted by the Flanders Marine Institute VLIZ