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Cyanorak: Cyanorak - A database of marine picocyanobacteria genomes
Citation
Cyanorak Database. Accessed: http://www.sb-roscoff.fr/cyanorak. https://marineinfo.org/doc/dataset/5938
Contact:

Dedicated website
Availability: Unrestricted
The data are freely available to anybody and may be used for any purpose. Usage acknowledgement may be required

Description
The Cyanorak Information system is a bioinformatic tool dedicated to the expert curation and annotation of clusters of orthologous sequences from marine picocyanobacteria. This tool was designed to perform extensive genomic comparisons with the aim to better understand the ecology, physiology and evolution of these very abundant photosynthetic microorganisms. more

Cyanorak v.1 was initially developed in the mid 2000's to annotate the first available genomes (11 Synechococcus and 3 Prochlorococcus, Dufresne et al., 2008, Scanlan et al., 2009). The current Cyanorak v.2 has been designed to allow the import and semi-automatic annotation of new sets of picocyanobacterial genomes. Since December 2014, the database encompasses 51 Synechococcus, 3 Cyanobium and 41 Prochlorococcus genomes, including 25 Synechococcus genomes recently sequenced by the Genoscope in the framework of the METASYN project and 7 by the Center for Genomic Research (Liverpool, UK) in collaboration with the Warwick University (Coventry, UK). Cyanorak v.2 was funded by the French ANR Programs, PELICAN (Microbial Genomics, ANR-09-GENM-030) and SAMOSA (Bioadapt, ANR-13-ADAP-0010), and the EU-FP7 programs microB3 (grant agreement no 287589) and MaCuMBA (grant agreement no 311975)

Scope
Themes:
Biology > Plankton > Phytoplankton
Keywords:
Marine/Coastal · Cyanobacteria · Databases · Environmental Impact Assessment · Genomes · Marine Genomics · Prochlorococcus · Synechococcus · Prochlorococcus S.W.Chisholm, S.L.Frankel, R.Goericke, R.J.Olson, B.Palenik, J.B.Waterbury, L.West-Johnsrud & E.R.Zettler, 1992 · Synechococcus Nägeli, 1849

Taxonomic coverage
Prochlorococcus S.W.Chisholm, S.L.Frankel, R.Goericke, R.J.Olson, B.Palenik, J.B.Waterbury, L.West-Johnsrud & E.R.Zettler, 1992 [WoRMS]
Synechococcus Nägeli, 1849 [WoRMS]

Parameter
DNA

Dataset status: Completed
Data type: Data
Data origin: Data collection
Metadatarecord created: 2018-05-17
Information last updated: 2018-05-23
All data in the Integrated Marine Information System (IMIS) is subject to the VLIZ privacy policy