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Integration of biodiversity monitoring data into the Digital Twin Ocean
https://doi.org/10.3030/101112823
https://dto-bioflow.eu
Identifier financieringsorganisatie: 101112823 (EU contract id)
Hoofdfinancieringscodes: 3858 - Horizon Europe – Voedsel, bio-economie, Natuurlijke hulpbronnen, landbouw en milieu
Acroniem: DTO - BioFlow
Periode: September 2023 tot Februari 2027
Status: Gestart

Thesaurustermen Biodiversiteit; Biologische oceanografie; Conservatie en biodiversiteit; Databasesystemen en -architecturen; Datacommunicatie; Modellering en simulatie
 Instituten | Publicaties | Datasets 
Instituten (15)  Top | Publicaties | Datasets 
Abstract

DTO-BioFlow zal de toegang tot gegevens uit mariene biodiversiteitsmonitoring activeren en geautomatiseerde gegevensstromen uit verschillende bronnen naar EMODnet en naar de EDITO-infrastructuur mogelijk maken, ten dienste van de EU-DTO . Door een combinatie van duurzame gegevensstromen, modellen en nieuwe algoritmen zal DTO-BioFlow de biologische component van de DTO ontwikkelen en integreren, met inbegrip van nieuwe digitale instrumenten en diensten.

Datasets (58)  Top | Instituten | Publicaties 
  • Data
    • Anadon R, Lopez Garcia E (2025). Atlantic Meridional Transect cruise AMT13 Microzooplankton (nauplii and copepodites) and mesozooplankton taxonomy and abundance (Net Hauls). British Oceanographic Data Centre. , meer
    • Baeyens, R.; Vergeynst, J.; De Maerteleire, N.; Desmet, P.; Gelaude, E.; Milotic, T.; Mouton, A.; Pauwels, I.; Pieters, S.; Reyserhove, L.; Robberechts, K.; Verhelst, P.; Coeck, J.; (2020): 2013_ALBERTKANAAL - Acoustic telemetry data for European eel (Anguilla anguilla) and hatched Salmon (Salmo salar) in the Albert canal (Belgium). Marine Data Archive., meer
    • Balch W, Bowler B (2025). Atlantic Meridional Transect cruise AMT15 Coccolithophore composition - light microscopy (CTD bottles). British Oceanographic Data Centre. , meer
    • Balch W, Bowler B (2025). Atlantic Meridional Transect cruise AMT15 Coccolithophore composition - light microscopy (surface underway). British Oceanographic Data Centre., meer
    • Balch W, Drapeau D (2025). Atlantic Meridional Transect cruise AMT16 Coccolithophore composition - light microscopy (CTD bottles). British Oceanographic Data Centre., meer
    • Balch W, Drapeau D (2025). Atlantic Meridional Transect cruise JC053 Coccolithophore composition - light microscopy (CTD bottles). British Oceanographic Data Centre., meer
    • Balch W, Drapeau D (2025). Atlantic Meridional Transect cruise JC053 Coccolithophore composition - light microscopy (surface underway). British Oceanographic Data Centre., meer
    • Balch W, Lyczkowski E (2025). Atlantic Meridional Transect cruise JC039 Coccolithophore composition - light microscopy (CTD bottles). British Oceanographic Data Centre., meer
    • Balch W, Lyczkowski E (2025). Atlantic Meridional Transect cruise JC039 Coccolithophore composition - light microscopy (surface underway). British Oceanographic Data Centre., meer
    • Buysse, D.; Mouton, A.; Baeyens, R.; De Maerteleire, N.; Desmet, P.; Gelaude, E.; Jacobs, Y.; Pauwels, I.; Reyserhove, L.; Coeck, J.; (2020): 2011_RIVIERPRIK - Acoustic telemetry data for river lamprey (Lampetra fluviatilis) in the upper Scheldt river (Belgium). Marine Data Archive., meer
    • Dijkstra B, Dillerop R, Oosterbeek K, Bouten W, Desmet P, van der Kolk H, Ens B J (2024). O_ASSEN - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding in Assen (the Netherlands). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., meer
    • Dokter A M, Oosterbeek K, Baptist M J, Desmet P, van der Kolk H, Bouten W, Ens B J (2024). O_BALGZAND - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) wintering on Balgzand (the Netherlands). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., meer
    • Giordano P, Titocci J, Ingrosso G, Nicolai A, Berra G (2025). Composition and morpho-functional traits of zooplankton swimmers and sinkers collected by "Mooring Dirigibile Italia" sediment trap. Consiglio Nazionale delle Ricerche, Istituto di Scienze Polari. , meer
    • González García L, Barata C, Idárraga Garcés V (2025). Whale-Watching cetacean occurrences by Futurismo Azores Adventures from 2008 to 2018 off São Miguel (Azores). Futurismo Azores Adventures., meer
    • Hampton P, Fileman E (2025). Atlantic Meridional Transect cruise AMT12 - Microzooplankton abundance and biomass (optical microscopy) (CTD bottles). British Oceanographic Data Centre., meer
    • Hampton P, Fileman E (2025). Atlantic Meridional Transect cruise AMT13 - Microzooplankton abundance and biomass (optical microscopy) (CTD bottles). British Oceanographic Data Centre., meer
    • Lubinevsky H, Tom M (2025). Macrofauna of the Mediterranean lsraeli deep-sea. Israel Oceanographic and Limnological research. , meer
    • Lubinevsky H, Tom M (2025). Macrofauna of the Mediterranean lsraeli shallow shelf-monitoring. Israel Oceanographic and Limnological research., meer
    • Lubinevsky H, Tom M (2025). Macrofauna of the eastern Mediterranean lsraeli shelf. Israel Oceanographic and Limnological research., meer
    • Montagnes D J S, Wilson D (2025). Marine Productivity programme cruise DI258 - Microzooplankton taxonomic data (CTD and Ocean Sampler). British Oceanographic Data Centre., meer
    • Montagnes D J S, Wilson D (2025). Marine Productivity programme cruise DI262 - Microzooplankton taxonomic data (CTD and Ocean Sampler). British Oceanographic Data Centre. , meer
    • Montagnes D J S, Wilson D (2025). Marine Productivity programme cruise DI264 - Microzooplankton taxonomic data (CTD and Ocean Sampler). British Oceanographic Data Centre., meer
    • Nilsson C, Anton V, Burman E, Germishuys J, Obst M (2025). Koster historical biodiversity assessment. Version 1.10. Wildlife.ai. Occurrence dataset. https://doi.org/10.15468/rzhmef, meer
    • Office Français de la Biodiversité ​(OFB), Sorbonne Université/CNRS - Institut de la Mer de Villefranche (IMEV), Sorbonne Université/CNRS - Laboratoire d'Océanographie de Villefranche (LOV); 2020; Plankton community in WP2 net (200µm), PNMIR cruises, Parc Naturel Marin d'Iroise, France, meer
    • Oosterbeek K, Bom R A, Shamoun-Baranes J, Desmet P, van der Kolk H, Bouten W, Ens B J (2024). O_SCHIERMONNIKOOG - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding on Schiermonnikoog (the Netherlands). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., meer
    • Oosterbeek K, de Jong J, Desmet P, van der Kolk H, Bouten W, Ens B J (2024). O_AMELAND - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding on Ameland (the Netherlands). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., meer
    • Pauwels, I.; Baeyens, R.; De Maerteleire, N.; Desmet, P.; Gelaude, E.; Milotic, T.; Pieters, S.; Reyserhove, L.; Robberechts, K.; Verhelst, P.; Coeck, J.; (2020): 2014_DEMER - Acoustic telemetry data for four fish species in the Demer river (Belgium). Marine Data Archive., meer
    • Plymouth Marine Laboratory (2025). The Plymouth Marine Laboratory Bristol Channel Project - Zooplankton and fish taxonomy and abundance. British Oceanographic Data Centre., meer
    • Ramalho S, Hilário A, Santos J, Araújo S M, Ramirez-Llodra E, Matos F L (2026). Megafauna composition in Aurora seamount and hydrothermal vent field (High Arctic) identified during the 'HACON expedition 2019' with the RV Kronprins Haakon (cruise no. 2019708). Flanders Marine Institute., meer
    • 2010_PHD_REUBENS: Reubens, J.; Degraer, S.; Desmet, P.; Moens, T.; Reyserhove, L.; Vincx, M.; (2020): 2010_PHD_REUBENS - Acoustic telemetry data for Atlantic cod (Gadus morhua) in the C-Power wind farm in the southern North Sea (Belgium). Marine Data Archive., meer
    • Sea Watch Foundation non effort-related sightings database. Accessed on –INSERT DATE-, meer
    • Sea Watch Foundation non effort-related sightings database. Accessed on –INSERT DATE-, meer
    • Skreslet S, Krogstad M, Olsen K (2025). Plankton net data from subarctic fjords in the Norwegian Sea 1980-2005. Nord University., meer
    • Sorbonne Université/CNRS - Institut de la Mer de Villefranche (IMEV), Sorbonne Université/CNRS - Laboratoire d'Océanographie de Villefranche (LOV); 2020; Plankton community in Bongo net, MOOSE-GE cruises, North-Western Mediterranean Sea., meer
    • Sorbonne Université/CNRS - Institut de la Mer de Villefranche (IMEV), Sorbonne Université/CNRS - Laboratoire d'Océanographie de Villefranche (LOV); 2020; Plankton community in Juday-Bogorov (330µm) net, Point B, Villefranche-sur-Mer, France, meer
    • Sorbonne Université/CNRS - Institut de la Mer de Villefranche (IMEV), Sorbonne Université/CNRS - Laboratoire d'Océanographie de Villefranche (LOV); 2020; Plankton community in Régent (680µm) net, Point B, Villefranche-sur-Mer, France, meer
    • Sorbonne Université/CNRS - Institut de la Mer de Villefranche (IMEV), Sorbonne Université/CNRS - Laboratoire d'Océanographie de Villefranche (LOV); 2020; Plankton community in WP2 net (200µm), DYFAMED point, Ligurian Sea, France, meer
    • Sorbonne Université/CNRS - Institut de la Mer de Villefranche (IMEV), Sorbonne Université/CNRS - Laboratoire d'Océanographie de Villefranche (LOV); 2020; Plankton community in WP2 net (200µm), Point B, Villefranche-sur-Mer, France, meer
    • Spanoghe G, Janssens K, Milotic T, Desmet P (2024). SPOONBILL_VLAANDEREN - Eurasian spoonbills (Platalea leucorodia, Threskiornithidae) in Flanders (Belgium). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., meer
    • Spanoghe G, Janssens K, Nijs G, Milotic T, Desmet P (2024). CURLEW_VLAANDEREN - Eurasian curlews (Numenius arquata, Scolopacidae) breeding in Flanders (Belgium). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., meer
    • Stichting ANEMOON. ANEMOON Beach washup monitoring (SMP) data along the Dutch coastline collected through citizen science. stichting ANEMOON. , meer
    • Stienen E W, Desmet P, Milotic T, Hernandez F, Deneudt K, Bouten W, Müller W, Matheve H, Lens L (2024). LBBG_ZEEBRUGGE - Lesser black-backed gulls (Larus fuscus, Laridae) breeding at the southern North Sea coast (Belgium and the Netherlands). Version 1.2. Research Institute for Nature and Forest (INBO). Occurrence dataset., meer
    • Stienen E W, Desmet P, Milotic T, Hernandez F, Deneudt K, Matheve H, Bouten W (2024). HG_OOSTENDE - Herring gulls (Larus argentatus, Laridae) breeding at the southern North Sea coast (Belgium). Version 1.2. Research Institute for Nature and Forest (INBO). Occurrence dataset., meer
    • Stienen E W, Desmet P, Milotic T, Spanoghe G, Janssens K (2024). MEDGULL_ANTWERPEN - Mediterranean gulls (Ichthyaetus melanocephalus, Laridae) breeding near Antwerp (Belgium). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., meer
    • Stienen E W, Müller W, Lens L, Milotic T, Desmet P (2024). LBBG_JUVENILE - Juvenile lesser black-backed gulls (Larus fuscus, Laridae) and herring gulls (Larus argentatus, Laridae) hatched in Zeebrugge (Belgium). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., meer
    • Stienen E W, Mülller W, Lens L, Milotic T, Desmet P (2024). LBBG_ADULT - Lesser black-backed gulls (Larus fuscus, Laridae) breeding in Belgium. Version 1.2. Research Institute for Nature and Forest (INBO). Occurrence dataset., meer
    • Swedish Meteorological and Hydrological Institute (2024). SHARK - Phyto- and Microzooplankton Data Collected by Imaging FlowCytobots (IFCB) in Swedish and Adjacent Waters., meer
    • Tachon M, Austad M, Reiss H, McGovern M, Kokarev V (2025). Grab samples data from subarctic fjords in the Norwegian Sea 2013-2015. Nord University., meer
    • Tom M (2025). Cambridge expedition to the Suez canal 1924. Israel Oceanographic and Limnological research. , meer
    • Tom M (2025). Epifauna of Haifa Bay, Mediterranean Israeli Shelf-Moshe Tom's collection. Israel Oceanographic and Limnological research., meer
    • Tom M (2025). Sponges of the Israeli Mediterranean waters. Israel Oceanographic and Limnological research. , meer
    • Verhelst, P.; Buysse, D.; Baeyens, R.; De Maerteleire, N.; Desmet, P.; Gelaude, E.; Jacobs, Y.; Milotic, T.; Mouton, A.; Reyserhove, L.; Robberechts, K.; Coeck, J.; (2020): 2012_LEOPOLDKANAAL - Acoustic telemetry data for European eel (Anguilla anguilla) in a polder area in Flanders (Belgium). Marine Data Archive., meer
    • Verhelst, P.; Reubens, J.; Coeck, J.; De Maerteleire, N.; Desmet, P.; Gelaude, E.; Mouton, A.; Pieters, S.; Reyserhove, L.; Robberechts, K.; Moens, T.; (2020): 2015_PHD_VERHELST_EEL - Acoustic telemetry data for European eel (Anguilla anguilla) in the Scheldt estuary and southern North Sea (Belgium). Marine Data Archive., meer
    • Verhelst, P.; Reubens, J.; Desmet, P.; Reyserhove, L.; Moens, T.; (2020): 2015_PHD_VERHELST_COD - Acoustic telemetry data for Atlantic cod (Gadus morhua) in the Scheldt estuary and southern North Sea (Belgium). Marine Data Archive., meer
    • Vermeersch, S.; Pauwels, I.; Baeyens, R.; De Maerteleire, N.; Desmet, P.; Gelaude, E.; Milotic, T.; Pieters, S.; Reyserhove, L.; Robberechts, K.; Verhelst, P.; Coeck, J.; (2020): 2015_DIJLE - Acoustic telemetry data for five fish species in the Dijle river (Belgium). Marine Data Archive., meer
    • Visser A, Saito H (2025). PROcesses of Vertical Exchange in Shelf Seas cruise D1198 - Meso-zooplankton abundance data. British Oceanographic Data Centre., meer
    • van der Kolk H, Oosterbeek K, Jongejans E, Frauendorf M, Allen A M, Bouten W, Desmet P, de Kroon H, Ens B J, van de Pol M (2024). O_VLIELAND - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding and wintering on Vlieland (the Netherlands). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., meer
  • Software/models/scripts
    • Boone, W., Deneudt, K., & Muñiz, C. (2026). DTO-BioFlow: DUC 3 Assessing pelagic biodiversity and human impact - Changes in Plankton Communities (zenodo). Zenodo., meer
Publicaties (2)  Top | Instituten | Datasets 
  • Calonge, A.; Develter, R.; Muñiz, C.; Parcerisas, C.; Reubens, J.; Boone, W.; Deneudt, K.; Debusschere, E. (2026). Scalable low-cost seabed landers: The missing link for sustained, integrated, long-term observations in dynamic shallow seas. Remote Sensing in Ecology and Conservation Online first: 1-9. https://dx.doi.org/10.1002/rse2.70072, meer
  • Arvanitidis, C.; Ameixa, O.; Basset, A.; Chatzinikolaou, E.; Coman, C.; Companys, B.; De Leo, F.; Deneudt, K.; Drago, F.; Eriksson, J.; Ferrari, T.; Georgiev, T.; Giuliano, G.; Gruber, S.; Habermann, J.; Heil, K.; Hubbard, T.; Huertas Olivares, C.; Kotoulas, G.; Koureas, D.; Manola, N.; Marrocco, V.; Pade, N.; Portugal Melo, A.; Provenzale, A.; Psomopoulos, F.; Raes, N.; Robinson, S.; Ruch, P.; Schaap, D.; Stanica, A.; Stavropoulos, T.; Teixeira, H.; van Tienderen, P.; Tsigenopoulos, C.S.; Waterhouse, R.; Aprea, G.; Boër, M.; Casino, A.; Delauney, L.; Ewbank, J.; Mirtl, M.; Pavlic-Zupanc, J.; Penev, L.; Piera, J.; Pitta, P.; Puillat, I.; Richter, D.; Stepanyan, D.; Ussi, A.; Weslawski, J.; Zuquim, G. (2025). The Crete Declaration: Uniting science for one health. Research Ideas and Outcomes 11: e176120. https://dx.doi.org/10.3897/rio.11.e176120, meer
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